Skip to content

Sample patch JSON

Copy-paste example for strixonomy patch. Full reference: patch-reference.md.

[
  {
    "op": "create_entity",
    "entity_iri": "http://example.org/people#Student",
    "kind": "class"
  },
  {
    "op": "add_label",
    "entity_iri": "http://example.org/people#Student",
    "value": "Student"
  },
  {
    "op": "add_sub_class_of",
    "entity_iri": "http://example.org/people#Student",
    "parent_iri": "http://example.org/people#Person"
  }
]

# From a folder containing example.ttl (e.g. strixonomy-tutorial from first-success)
strixonomy patch ./example.ttl patches.json --preview
strixonomy patch ./example.ttl patches.json

Download: patches.json

OBO patches (v0.12)

Write synonym scope as OBO uppercase (EXACT, RELATED, …). See patch reference.

[
  {
    "op": "set_name",
    "term_id": "EX:001",
    "value": "example class"
  },
  {
    "op": "add_synonym",
    "term_id": "EX:001",
    "value": "example",
    "scope": "EXACT"
  },
  {
    "op": "add_is_a",
    "term_id": "EX:001",
    "parent_id": "EX:000"
  }
]

strixonomy patch ./terms.obo patches-obo.json --preview
strixonomy patch ./terms.obo patches-obo.json

Download: patches-obo.json

Complex axioms (v0.5)

[
  {
    "op": "add_complex_sub_class_of",
    "entity_iri": "http://example.org/clinic#Patient",
    "manchester": "ex:hasRecord some ex:MedicalRecord"
  },
  {
    "op": "set_equivalent_class",
    "entity_iri": "http://example.org/clinic#Staff",
    "manchester": "ex:Employee"
  }
]

RDF/XML and OWL/XML (v0.21)

The same Turtle-shaped patch JSON applies to .owl / .rdf / .owx via Horned re-serialize. Prefer core ops (labels, SubClassOf, imports, create/delete). See OWL/XML write-back and patch reference.

strixonomy patch ./ontology.owl patches.json --preview
strixonomy patch ./ontology.owl patches.json